PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400051154
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family WRKY
Protein Properties Length: 255aa    MW: 27474.5 Da    PI: 10.4798
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400051154genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY30.85.9e-10234254222
                           --SS-EEEEEEE--TT-SS-E CS
                  WRKY   2 dDgynWrKYGqKevkgsefpr 22 
                            D+++WrKYGqK++kgs +pr
  PGSC0003DMP400051154 234 ADEFSWRKYGQKPIKGSAYPR 254
                           69******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.1E-13185231IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.7E-9221254IPR003657WRKY domain
PROSITE profilePS5081111.13228254IPR003657WRKY domain
SuperFamilySSF1182909.68E-7231254IPR003657WRKY domain
PfamPF031061.2E-5235254IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAVVSKMTEN FAVQEAASAG LKSMEHLIRL VSHEPVQVDC REIADFTVSK FKKVISILDR  60
TGHARFRRGP VQAPVPVYPD SFTTLSLAPS LSFAPAKETP AVQLQTALTL DFTKPSVERP  120
IGNSSAFTAF AVKSKEVLMA TPTPTNSSSF MSSITGEATV SNGKQASSSM LLLPAQAGNL  180
PITGKRCREH EQSDDISGSK STGSGKCHCK KRKSRDKKVM RIAAISSRIA DIPADEFSWR  240
KYGQKPIKGS AYPR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0145010.0BT014501.1 Lycopersicon esculentum clone 133872F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342466.10.0PREDICTED: probable WRKY transcription factor 17
SwissprotQ9SV158e-68WRK11_ARATH; Probable WRKY transcription factor 11
TrEMBLM1CVB80.0M1CVB8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000755310.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.26e-60WRKY DNA-binding protein 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]